PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000031.1_g00023.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 291aa    MW: 32961.7 Da    PI: 5.1138
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000031.1_g00023.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.74e-202978255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                              y+GVr++  +g+WvAeIr+p++   r+r++lg+f taeeAa a+++a+++l+g
  Itr_sc000031.1_g00023.1 29 EYRGVRQRT-WGKWVAEIREPKK---RTRIWLGSFATAEEAAMAYDEAARRLYG 78
                             69****999.**********965...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.27E-322888No hitNo description
Gene3DG3DSA:3.30.730.101.3E-302987IPR001471AP2/ERF domain
PROSITE profilePS5103222.4842986IPR001471AP2/ERF domain
SMARTSM003801.5E-372992IPR001471AP2/ERF domain
PfamPF008471.7E-132978IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-212987IPR016177DNA-binding domain
PRINTSPR003671.4E-103041IPR001471AP2/ERF domain
PRINTSPR003671.4E-105268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MDNYRRNPLK PWKKGPARGK GGPQNATCEY RGVRQRTWGK WVAEIREPKK RTRIWLGSFA  60
TAEEAAMAYD EAARRLYGPE AYLNLPHLRS NVNPLINKSQ HNKFKWFPST NFISLFPSSG  120
LLNLSAQPSV HVIHQRLQEL KKTEASCHAS SSSSSSSEPI SEMLNMMEQQ PGLVNQETTE  180
KEPDFSSGEK LVNREEKPQI DLNEFLQQLG ILQKEDKSDV HDLSNCFPEP EPEPEPSLGD  240
SEADVFADKT YNWDTLEAIP GTEDNQTVDA SSLYLHDIND GLSFPPSIWN F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-183086360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-183091667ATERF1
3gcc_A2e-183091667ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00411DAPTransfer from AT3G57600Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009804771.11e-125PREDICTED: dehydration-responsive element-binding protein 2F
RefseqXP_016440548.11e-125PREDICTED: dehydration-responsive element-binding protein 2F-like
SwissprotQ9SVX58e-90DRE2F_ARATH; Dehydration-responsive element-binding protein 2F
TrEMBLA5B0531e-118A5B053_VITVI; Putative uncharacterized protein
STRINGVIT_08s0007g08150.t011e-118(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA70982329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.19e-78ERF family protein